Abstract: FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank. (PDB) (1). The current release. PDF | FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB). The database currently. FSSP (families of structurally similar proteins) is a database of structural alignments of proteins in the Protein Data Bank (PDB) . The database currently .
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Wikiquote 0 entries edit. LiBoojala V. Families of structurally similar proteinsa protein structures database Firing squad synchronization problema problem in computer science and cellular automata Frances Slocum State Parka state park in Luzerne County, Pennsylvania Priestly Fraternity of St.
Knowledge based modelling of homologous proteins, Part I: TaylorIosif I. Protein structure comparison by alignment of distance matrices. These similarities can be detected by structural comparisons that merge protein families of known 3-D structure into structural classes, the members of which may or may not be evolutionarily related 1—4. L Holm and C Sander.
Families of Structurally Similar Proteins database – Wikipedia
The index can be used for searching by protein name or PDB code. Identification and classification of protein fold families. Wikibooks 0 entries dwtabase. Cluster analysis statistical cluster.
Families of Structurally Similar Proteins database
ShindyalovPhilip E. Plotted with WhatIf Oxford University Press is a department of the University of Oxford.
See below for automatic parsing of FSSP entries. The major new developments since last year 5 are continuous updates of the database and easy access to the data using browsers on the World Wide Web WWW.
The FSSP database of structurally aligned protein fold families. Other sites 0 entries edit. Firing squad synchronization problem Protein Data Bank Hierarchical clustering. Wikinews 0 entries edit. Retrieved from ” https: All structured data from the main, property and lexeme namespaces dagabase available under the Creative Commons CC0 License ; text in the other namespaces is available under the Creative Commons Attribution-ShareAlike License ; additional terms may apply.
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World Wide Web Query language Sequence alignment. The sequence-representative set is fatabase further based on all-against-all structure comparison within the sequence-representative set. A multiple sequence alignment of four protein families: An FSSP file is divided in five formatted blocks fsap a free text footer which explains the format.
The FSSP database of structurally aligned protein fold families.
For each protein chain in the representative set, with PDB identifier Nxxx like: Tertiary structural constraints on protein evolutionary diversity: SRS–an indexing and retrieval tool for flat file data libraries. Skip to search form Skip to main content. Most newly determined protein sequences can be classified into families by dtaabase homology.
The tree gives a simple overview of protein families, gssp together remote homologs and joining topologically similar but not necessarily evolutionarily related proteins in the lower branches. The database currently contains an extended structural family for each of representative protein chains.
Searching protein structure databases has come of age. Large-scale comparison of protein sequence alignment algorithms with structure alignments. A database of protein structure families with common folding motifs.